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NTU OPTICAL BIO-IMAGING CENTRE (NOBIC)

Publications of NOBIC team members relevant to NOBIC activities:

Xiang YC, Seow KLC, Paterson C, Török P. (2021), Multivariate analysis of Brillouin imaging data by supervised and unsupervised learning. J Biophotonics e2723. DOI: 10.1002/jbio.202000508

Cheung KY, Jesuthasan SJ, Baxendale S, van Hateren NJ, Marzo M, Hill CJ, Whitfield TT. (2021), Olfactory Rod Cells: A Rare Cell Type in the Larval Zebrafish Olfactory Epithelium With a Large Actin-Rich Apical Projection. elicited by a chemosensory danger cue. Front Physiol 12: 626080. DOI: 10.3389/fphys.2021.626080

Seviour T, Winnerdy FR, Wong LL, Shi X, Mugunthan S, Foo YH, Castaing R, Adav SS, Subramoni S, Kohli GS, Shewan HM, Stokes JR, Rice SA, Phan AT, Kjelleberg S. (2021), The biofilm matrix scaffold of Pseudomonas aeruginosa contains G-quadruplex extracellular DNA structures. NPJ Biofilms Microbiomes 7: 27. DOI: 10.1038/s41522-021-00197-5

Lim GH, Yow AP, Zhao X, Wong WKD, Tey HL. (2021), 3D automated quantification of epidermal thickness and dermal heterogeneity in high-definition optical coherence tomography: Illustrative utility in morphea. Skin Res Technol DOI: 10.1111/srt.13005

Xiang Y, Basirun C, Chou J, Warkiani ME, Török P, Wang Y, Gao S, Kabakova I. (2020), Background-free fibre optic Brillouin probe for remote mapping of micromechanics. Biomedical Optics Express 11: 6687-6698. DOI: 10.1364/BOE.404535

Xiang Y, Foreman MR, Török P. (2020), SNR enhancement in brillouin microspectroscopy using spectrum reconstruction. Biomedical Optics Express 11: 1020-1031. DOI: 10.1364/BOE.380798

Seow KLC, Török P, Foreman MR. (2020), Single pixel polarimetric imaging through scattering media. Opt Lett 45: 5740-5743. DOI: 10.1364/OL.399554

Jesuthasan S, Krishnan S, Cheng RK, Mathuru A. (2020), Neural correlates of state transitions elicited by a chemosensory danger cue. Prog Neuropsychopharmacol Biol Psychiatry 110110. DOI: 10.1016/j.pnpbp.2020.110110

Ramaswamy M, Cheng RK, Jesuthasan S. (2020), Identification of GABAergic neurons innervating the zebrafish lateral habenula. Eur J Neurosci 52: 3918-3928. DOI: 10.1111/ejn.14843

Zhang S, Reljić B, Liang C, Kerouanton B, Francisco JC, Peh JH, Mary C, Jagannathan NS, Olexiouk V, Tang C, Fidelito G, Nama S, Cheng RK, Wee CL, Wang LC, Duek Roggli P, Sampath P, Lane L, Petretto E, Sobota RM, Jesuthasan S, Tucker-Kellogg L, Reversade B, Menschaert G, Sun L, Stroud DA, Ho L. (2020), Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. Nat Commun 11: 1312. DOI: 10.1038/s41467-020-14999-2

Du E, Shen S, Chong SP, Chen N. (2020), Multifunctional laser speckle imaging. Biomedical Optics Express 11: 2007-2016. DOI: 10.1364/BOE.388856

Vidaillac C, Yong VFL, Aschtgen MS, Qu J, Yang S, Xu G, Seng ZJ, Brown AC, Ali MK, Jaggi TK, Sankaran J, Foo YH, Righetti F, Nedumaran AM, Mac Aogáin M, Roizman D, Richard JA, Rogers TR, Toyofuku M, Luo D, Loh E, Wohland T, Czarny B, Horvat JC, Hansbro PM, Yang L, Li L, Normark S, Henriques Normark B, Chotirmall SH. (2020), Sex Steroids Induce Membrane Stress Responses and Virulence Properties in Pseudomonas aeruginosa. mBio 11: e01774-20. DOI: 10.1128/mBio.01774-20

Tan B, Wong DWK, Yow AP, Yao X, Schmetterer L. (2020) Three-dimensional choroidal vessel network quantification using swept source optical coherence tomography. Annu Int Conf IEEE Eng Med Biol Soc:1883-1886. DOI: 10.1109/EMBC44109.2020.9175242

Wong DWK, Yow AP, Tan B, Xinwen Y, Chua J, Schmetterer L. (2020), Localization of Anatomical Features in Vascular-enhanced Enface OCT Images. Annu Int Conf IEEE Eng Med Biol Soc.: 1875-1878. DOI: 10.1109/EMBC44109.2020.9175868

Yow AP, Tan B, Chua J, Aung T, Husain R, Schmetterer L, Wong D. (2020), Automated circumpapillary retinal nerve fiber layer segmentation in high-resolution swept-source OCT. Annu Int Conf IEEE Eng Med Biol Soc: 1832-1835. DOI: 10.1109/EMBC44109.2020.9175828

Cahyo DAY, Wong DWK, Yow AP, Saw SM, Schmetterer L. (2020), Volumetric Choroidal Segmentation Using Sequential Deep Learning Approach in High Myopia Subjects. Annu Int Conf IEEE Eng Med Biol Soc: 1286-1289. DOI: 10.1109/EMBC44109.2020.9176184

Kadziauskienė A, Chua J, Baskaran M, Yow AP, Tan B, Sng C, Ašoklis R, Lesinskas E, Crowston J, Schmetterer L, Wong DWK.(2020), Association Between Structure-function Characteristics and Visual Field Outcomes in Glaucoma Subjects With Intraocular Pressure Reduction After Trabeculectomy. J Glaucoma 29: 648-655. DOI: 10.1097/IJG.0000000000001550

Yow AP, Srivastava R, Cheng J, Li A, Liu J, Schmetterer L, Tey HL, Wong DWK. (2020), Techniques and Applications in Skin OCT Analysis. Adv Exp Med Biol 1213: 149-163. DOI: 10.1007/978-3-030-33128-3_10

Wohland T, Maiti S, Macháň R. An Introduction to Fluorescence Correlation Spectroscopy, IOP Publishing, Bristol (2020), DOI: 10.1088/978-0-7503-2080-1

Ghilardi M, Boys H, Török P, Busfield JJC, Carpi F. (2019) Smart Lenses with Electrically Tuneable Astigmatism. Scientific Reports 9: 16127. DOI: 10.1038/s41598-019-52168-8

Wu P-J, Masouleh MI, Paterson C, Dini D, Török P, Overby DR, Kabakova IV. (2019), Detection of proteoglycan loss from articular cartilage using Brillouin microscopy, with applications to osteoarthritis. Biomedical Optics Express 10: 2457-2466. DOI: 10.1364/BOE.10.002457

Török P, Foreman MR. (2019), Precision and informational limits in inelastic optical spectroscopy. Scientific Reports 9: 6140. DOI: 10.1038/s41598-019-42619-7

Chia JSM, Wall ES, Wee CL, Rowland TAJ, Cheng RK, Cheow K, Guillemin K, Jesuthasan S. (2019), Bacteria evoke alarm behaviour in zebrafish. Nat Commun 10: 3831. DOI: 10.1038/s41467-019-11608-9

Zhu J, Chong SP, Zhou W, Srinivasan VJ. (2019), Noninvasive, in vivo rodent brain optical coherence tomography at 2.1  microns. Opt Lett 44: 4147-4150. DOI: 10.1364/OL.44.004147

Liew ATF, Foo YH, Gao Y, Zangoui P, Singh MK, Gulvady R, Kenney LJ. (2019), Single cell, super-resolution imaging reveals an acid pH-dependent conformational switch in SsrB regulates SPI-2. Elife 8: e45311. DOI: 10.7554/eLife.45311

Tan CWX, Tan WD, Srivastava R, Yow AP, Wong DWK, Tey HL. (2019), Dissolving Triamcinolone-Embedded Microneedles for the Treatment of Keloids: A Single-Blinded Intra-Individual Controlled Clinical Trial. Dermatol Ther (Heidelb) 9: 601-611. DOI: 10.1007/s13555-019-00316-3

Wu P-J, Kabakova I, Ruberti J, Sherwood J, Dunlop IE, Paterson C, Török P, Overby D. (2018) Water content, not stiffness, dominates Brillouin spectroscopy measurements in hydrated materials. Nature Methods 15: 561-562. DOI: 10.1038/s41592-018-0076-1

Zhou W, Kholiqov O, Chong SP, Srinivasan VJ. (2018), Highly parallel, interferometric diffusing wave spectroscopy for monitoring cerebral blood flow dynamics. Optica 5: 518-527. DOI: 10.1364/OPTICA.5.000518

Chong SP, Zhang T, Kho A, Bernucci MT, Dubra A, Srinivasan VJ. (2018), Ultrahigh resolution retinal imaging by visible light OCT with longitudinal achromatization. Biomed Opt Express 9: 1477-1491. DOI: 10.1364/BOE.9.001477

Merkle CW, Chong SP, Kho AM, Zhu J, Dubra A, Srinivasan VJ. (2018), Visible light optical coherence microscopy of the brain with isotropic femtoliter resolution in vivo. Opt Lett 43: 198-201. DOI: 10.1364/OL.43.000198

Agarwal K, Macháň R, Prasad DK. (2018), Non-heuristic automatic techniques for overcoming low signal-to-noise-ratio bias of localization microscopy and multiple signal classification algorithm. Sci Rep 8: 4988. DOI: 10.1038/s41598-018-23374-7

Yow AP, Wong D, Lim TH, Laude A. (2018), Automatic Detection of Preferred Retinal Locus (PRL) for Low Vision Rehabilitation using Oculometrics Analysis. Annu Int Conf IEEE Eng Med Biol Soc: 3954-3957. DOI: 10.1109/EMBC.2018.8513394

Srivastava R, Yow AP, Cheng J, Wong DWK, Tey HL. (2018), Three-dimensional graph-based skin layer segmentation in optical coherence tomography images for roughness estimation. Biomed Opt Express 9: 3590-3606. DOI: 10.1364/BOE.9.003590





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